#!/bin/bash set -e ## CUDA environmental variables configuration for RStudio ## These should be exported as ENV vars too CUDA_HOME=${CUDA_HOME:-/usr/local/cuda} PATH={$PATH:-$PATH:$CUDA_HOME/bin} LD_LIBRARY_PATH=${LD_LIBRARY_PATH:-$LD_LIBRARY_PATH:$CUDA_HOME/lib64:$CUDA_HOME/extras/CUPTI/lib64} NVBLAS_CONFIG_FILE=${NVBLAS_CONFIG_FILE:-/etc/nvblas.conf} ## cli R inherits these, but RStudio needs to have these set in as follows: ## (From https://tensorflow.rstudio.com/tools/local_gpu.html#environment-variables) echo "CUDA_HOME=$CUDA_HOME" >> ${R_HOME}/etc/Renviron.site echo "PATH=$PATH" >> ${R_HOME}/etc/Renviron.site if test -f /etc/rstudio/rserver.conf; then sed -i '/^rsession-ld-library-path/d' /etc/rstudio/rserver.conf echo "rsession-ld-library-path=$LD_LIBRARY_PATH" >> /etc/rstudio/rserver.conf fi ## nvblas configuration touch /var/log/nvblas.log && chown :staff /var/log/nvblas.log chmod a+rw /var/log/nvblas.log ## Configure R & RStudio to use drop-in CUDA blas ## Allow R to use CUDA for BLAS, with fallback on openblas ## NOTE: NVBLAS_CPU_BLAS_LIB must be correct for UBUNTU_VERSION selected in scripts/install_R.sh#L25 echo 'NVBLAS_LOGFILE /var/log/nvblas.log NVBLAS_CPU_BLAS_LIB /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 NVBLAS_GPU_LIST ALL' > /etc/nvblas.conf echo "NVBLAS_CONFIG_FILE=$NVBLAS_CONFIG_FILE" >> ${R_HOME}/etc/Renviron.site ## We don't want to set LD_PRELOAD globally ##ENV LD_PRELOAD=/usr/local/cuda/lib64/libnvblas.so # ### Instead, we will set it before calling R, Rscript, or RStudio: #mv /usr/bin/R /usr/bin/R_ #mv /usr/bin/Rscript /usr/bin/Rscript_ # #echo '\#!/bin/sh \ # \n LD_PRELOAD=/usr/local/cuda/lib64/libnvblas.so /usr/bin/R_ "$@"' \ # > /usr/bin/R && \ # chmod +x /usr/bin/R && \ # echo '#!/bin/sh \ # \n LD_PRELOAD=/usr/local/cuda/lib64/libnvblas.so /usr/bin/Rscript_ "$@"' \ # > /usr/bin/Rscript && \ # chmod +x /usr/bin/Rscript # #echo '#!/usr/bin/with-contenv bash \ # \n## load /etc/environment vars first: \ # \n for line in \$( cat /etc/environment ) ; do export $line ; done \ # \n export LD_PRELOAD=/usr/local/cuda/lib64/libnvblas.so \ # \n exec /usr/lib/rstudio-server/bin/rserver --server-daemonize 0' \ # > /etc/services.d/rstudio/run