# Generated by roxygen2: do not edit by hand S3method(BoxCoxTrans,default) S3method(F_meas,default) S3method(F_meas,table) S3method(as.data.frame,resamples) S3method(as.matrix,confusionMatrix) S3method(as.matrix,resamples) S3method(as.table,confusionMatrix) S3method(avNNet,default) S3method(avNNet,formula) S3method(bag,default) S3method(bag,formula) S3method(bagEarth,default) S3method(bagEarth,formula) S3method(bagFDA,default) S3method(bagFDA,formula) S3method(bwplot,diff.resamples) S3method(bwplot,resamples) S3method(calibration,default) S3method(calibration,formula) S3method(classDist,default) S3method(cluster,default) S3method(cluster,resamples) S3method(confusionMatrix,default) S3method(confusionMatrix,matrix) S3method(confusionMatrix,rfe) S3method(confusionMatrix,sbf) S3method(confusionMatrix,table) S3method(confusionMatrix,train) S3method(densityplot,diff.resamples) S3method(densityplot,resamples) S3method(densityplot,rfe) S3method(densityplot,sbf) S3method(densityplot,train) S3method(diff,resamples) S3method(dotplot,diff.resamples) S3method(dotplot,resamples) S3method(dummyVars,default) S3method(enumLC,default) S3method(expoTrans,default) S3method(fitted,train) S3method(format,bagEarth) S3method(gafs,default) S3method(gafs,recipe) S3method(ggplot,calibration) S3method(ggplot,gafs) S3method(ggplot,lift) S3method(ggplot,resamples) S3method(ggplot,rfe) S3method(ggplot,safs) S3method(ggplot,train) S3method(ggplot,varImp.train) S3method(histogram,rfe) S3method(histogram,sbf) S3method(histogram,train) S3method(icr,default) S3method(icr,formula) S3method(knn3,data.frame) S3method(knn3,formula) S3method(knn3,matrix) S3method(knnreg,data.frame) S3method(knnreg,default) S3method(knnreg,formula) S3method(knnreg,matrix) S3method(levelplot,diff.resamples) S3method(levels,train) S3method(lift,default) S3method(lift,formula) S3method(negPredValue,default) S3method(negPredValue,matrix) S3method(negPredValue,table) S3method(nullModel,default) S3method(oob_pred,list) S3method(oob_pred,rfe) S3method(oob_pred,sbf) S3method(oob_pred,train) S3method(parallelplot,resamples) S3method(pcaNNet,default) S3method(pcaNNet,formula) S3method(plot,calibration) S3method(plot,gafs) S3method(plot,lift) S3method(plot,prcomp.resamples) S3method(plot,rfe) S3method(plot,safs) S3method(plot,train) S3method(plot,varImp.train) S3method(plsda,default) S3method(posPredValue,default) S3method(posPredValue,matrix) S3method(posPredValue,table) S3method(prcomp,resamples) S3method(preProcess,default) S3method(precision,default) S3method(precision,table) S3method(predict,BoxCoxTrans) S3method(predict,avNNet) S3method(predict,bag) S3method(predict,bagEarth) S3method(predict,bagFDA) S3method(predict,classDist) S3method(predict,dummyVars) S3method(predict,expoTrans) S3method(predict,gafs) S3method(predict,icr) S3method(predict,knn3) S3method(predict,knnreg) S3method(predict,list) S3method(predict,nullModel) S3method(predict,pcaNNet) S3method(predict,plsda) S3method(predict,preProcess) S3method(predict,rfe) S3method(predict,safs) S3method(predict,sbf) S3method(predict,splsda) S3method(predict,train) S3method(predict,train.recipe) S3method(predictors,default) S3method(predictors,formula) S3method(predictors,gafs) S3method(predictors,list) S3method(predictors,rfe) S3method(predictors,safs) S3method(predictors,sbf) S3method(predictors,terms) S3method(predictors,train) S3method(print,BoxCoxTrans) S3method(print,avNNet) S3method(print,bag) S3method(print,bagEarth) S3method(print,bagFDA) S3method(print,calibration) S3method(print,classDist) S3method(print,confusionMatrix) S3method(print,confusionMatrix.rfe) S3method(print,confusionMatrix.sbf) S3method(print,confusionMatrix.train) S3method(print,diff.resamples) S3method(print,dummyVars) S3method(print,expoTrans) S3method(print,gafs) S3method(print,icr) S3method(print,knn3) S3method(print,knnreg) S3method(print,lift) S3method(print,nullModel) S3method(print,pcaNNet) S3method(print,plsda) S3method(print,prcomp.resamples) S3method(print,preProcess) S3method(print,resamples) S3method(print,rfe) S3method(print,safs) S3method(print,sbf) S3method(print,splsda) S3method(print,summary.bag) S3method(print,summary.bagEarth) S3method(print,summary.bagFDA) S3method(print,summary.diff.resamples) S3method(print,summary.resamples) S3method(print,train) S3method(print,varImp.train) S3method(recall,default) S3method(recall,table) S3method(resamples,default) S3method(residuals,train) S3method(rfe,default) S3method(rfe,formula) S3method(rfe,recipe) S3method(safs,default) S3method(safs,recipe) S3method(sbf,default) S3method(sbf,formula) S3method(sbf,recipe) S3method(sensitivity,default) S3method(sensitivity,table) S3method(sort,resamples) S3method(spatialSign,data.frame) S3method(spatialSign,default) S3method(spatialSign,matrix) S3method(specificity,default) S3method(specificity,table) S3method(splom,resamples) S3method(splsda,default) S3method(stripplot,rfe) S3method(stripplot,train) S3method(summary,bag) S3method(summary,bagEarth) S3method(summary,bagFDA) S3method(summary,diff.resamples) S3method(summary,resamples) S3method(summary,train) S3method(train,default) S3method(train,formula) S3method(train,recipe) S3method(trim,train) S3method(update,gafs) S3method(update,rfe) S3method(update,safs) S3method(update,train) S3method(varImp,C5.0) S3method(varImp,Gam) S3method(varImp,JRip) S3method(varImp,PART) S3method(varImp,RRF) S3method(varImp,RandomForest) S3method(varImp,avNNet) S3method(varImp,bagEarth) S3method(varImp,bagFDA) S3method(varImp,classbagg) S3method(varImp,cubist) S3method(varImp,dsa) S3method(varImp,earth) S3method(varImp,fda) S3method(varImp,gafs) S3method(varImp,gam) S3method(varImp,gbm) S3method(varImp,glm) S3method(varImp,glmnet) S3method(varImp,lm) S3method(varImp,multinom) S3method(varImp,mvr) S3method(varImp,nnet) S3method(varImp,pamrtrained) S3method(varImp,plsda) S3method(varImp,randomForest) S3method(varImp,regbagg) S3method(varImp,rfe) S3method(varImp,rpart) S3method(varImp,safs) S3method(varImp,sbf) S3method(varImp,train) S3method(xyplot,calibration) S3method(xyplot,lift) S3method(xyplot,resamples) S3method(xyplot,rfe) S3method(xyplot,train) export(BoxCoxTrans) export(F_meas) export(LPH07_1) export(LPH07_2) export(MAE) export(MeanSD) export(R2) export(RMSE) export(SLC14_1) export(SLC14_2) export(anovaScores) export(avNNet) export(bag) export(bagControl) export(bagEarth) export(bagEarthStats) export(bagFDA) export(best) export(calibration) export(caretFuncs) export(caretGA) export(caretSA) export(caretSBF) export(caretTheme) export(cforestStats) export(checkConditionalX) export(checkInstall) export(checkResamples) export(class2ind) export(classDist) export(cluster) export(compare_models) export(confusionMatrix) export(confusionMatrix.train) export(contr.dummy) export(contr.ltfr) export(createDataPartition) export(createFolds) export(createModel) export(createMultiFolds) export(createResample) export(createTimeSlices) export(ctreeBag) export(defaultSummary) export(dotPlot) export(downSample) export(dummyVars) export(expandParameters) export(expoTrans) export(extractPrediction) export(extractProb) export(featurePlot) export(filterVarImp) export(findCorrelation) export(findLinearCombos) export(flatTable) export(gafs) export(gafs.default) export(gafsControl) export(gafs_initial) export(gafs_lrSelection) export(gafs_raMutation) export(gafs_rwSelection) export(gafs_spCrossover) export(gafs_tourSelection) export(gafs_uCrossover) export(gamFormula) export(gamFuncs) export(gamScores) export(getModelInfo) export(getSamplingInfo) export(getTrainPerf) export(ggplot.gafs) export(ggplot.safs) export(groupKFold) export(hasTerms) export(icr) export(index2vec) export(ipredStats) export(knn3) export(knn3Train) export(knnreg) export(knnregTrain) export(ldaBag) export(ldaFuncs) export(ldaSBF) export(learning_curve_dat) export(lift) export(lmFuncs) export(lmSBF) export(lrFuncs) export(maxDissim) export(minDiss) export(mnLogLoss) export(modelCor) export(modelLookup) export(multiClassSummary) export(nbBag) export(nbFuncs) export(nbSBF) export(nearZeroVar) export(negPredValue) export(nnetBag) export(nullModel) export(nzv) export(oneSE) export(outcome_conversion) export(panel.calibration) export(panel.lift) export(panel.lift2) export(panel.needle) export(pcaNNet) export(pickSizeBest) export(pickSizeTolerance) export(pickVars) export(plot.gafs) export(plot.rfe) export(plot.safs) export(plot.train) export(plotClassProbs) export(plotObsVsPred) export(plsBag) export(plsda) export(posPredValue) export(postResample) export(prSummary) export(preProcess) export(precision) export(predict.bagEarth) export(predict.gafs) export(predict.train) export(predictionFunction) export(predictors) export(print.train) export(probFunction) export(progress) export(recall) export(resampleHist) export(resampleSummary) export(resampleWrapper) export(resamples) export(rfFuncs) export(rfGA) export(rfSA) export(rfSBF) export(rfStats) export(rfe) export(rfeControl) export(rfeIter) export(safs) export(safsControl) export(safs_initial) export(safs_perturb) export(safs_prob) export(sbf) export(sbfControl) export(sbfIter) export(sensitivity) export(sortImp) export(spatialSign) export(specificity) export(splsda) export(sumDiss) export(summary.bagEarth) export(svmBag) export(thresholder) export(tolerance) export(train) export(trainControl) export(treebagFuncs) export(treebagGA) export(treebagSA) export(treebagSBF) export(twoClassSim) export(twoClassSummary) export(upSample) export(varImp) export(var_seq) export(well_numbered) import(foreach) import(ggplot2) import(lattice) import(methods) import(nlme) import(plyr) import(recipes) import(reshape2) importFrom(ModelMetrics,auc) importFrom(grDevices,extendrange) importFrom(pROC,roc) importFrom(plyr,ddply) importFrom(recipes,all_outcomes) importFrom(recipes,all_predictors) importFrom(recipes,bake) importFrom(recipes,has_role) importFrom(recipes,juice) importFrom(recipes,prep) importFrom(stats,.checkMFClasses) importFrom(stats,.getXlevels) importFrom(stats,aggregate) importFrom(stats,anova) importFrom(stats,approx) importFrom(stats,as.formula) importFrom(stats,binom.test) importFrom(stats,binomial) importFrom(stats,complete.cases) importFrom(stats,contrasts) importFrom(stats,cor) importFrom(stats,cov) importFrom(stats,delete.response) importFrom(stats,dist) importFrom(stats,fitted) importFrom(stats,fitted.values) importFrom(stats,glm) importFrom(stats,hclust) importFrom(stats,lm) importFrom(stats,loess) importFrom(stats,mahalanobis) importFrom(stats,mcnemar.test) importFrom(stats,median) importFrom(stats,model.extract) importFrom(stats,model.frame) importFrom(stats,model.matrix) importFrom(stats,model.response) importFrom(stats,model.weights) importFrom(stats,na.fail) importFrom(stats,na.omit) importFrom(stats,na.pass) importFrom(stats,optim) importFrom(stats,p.adjust) importFrom(stats,prcomp) importFrom(stats,predict) importFrom(stats,pt) importFrom(stats,qnorm) importFrom(stats,quantile) importFrom(stats,rbinom) importFrom(stats,reorder) importFrom(stats,reshape) importFrom(stats,resid) importFrom(stats,residuals) importFrom(stats,rnorm) importFrom(stats,runif) importFrom(stats,sd) importFrom(stats,t.test) importFrom(stats,terms) importFrom(stats,toeplitz) importFrom(stats,update) importFrom(stats,var) importFrom(stats4,coef) importFrom(utils,capture.output) importFrom(utils,combn) importFrom(utils,flush.console) importFrom(utils,getFromNamespace) importFrom(utils,globalVariables) importFrom(utils,head) importFrom(utils,install.packages) importFrom(utils,installed.packages) importFrom(utils,menu) importFrom(utils,modifyList) importFrom(utils,object.size) importFrom(utils,stack) importFrom(withr,with_seed) useDynLib(caret)