/*========================================================================= * * Copyright Insight Software Consortium * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0.txt * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * *=========================================================================*/ #ifndef itkIOTestHelper_h #define itkIOTestHelper_h #include "ITKIOImageBaseExport.h" #include #include "itksys/SystemTools.hxx" #include "itkImageFileWriter.h" #include "itkImageFileReader.h" #include "vnl/vnl_random.h" namespace itk { class IOTestHelper { public: template static typename TImage::Pointer ReadImage( const std::string &fileName, const bool zeroOrigin = false ) { typedef itk::ImageFileReader ReaderType; typename ReaderType::Pointer reader = ReaderType::New(); { reader->SetFileName( fileName.c_str() ); try { reader->Update(); } catch( itk::ExceptionObject & err ) { std::cout << "Caught an exception: " << std::endl; std::cout << err << " " << __FILE__ << " " << __LINE__ << std::endl; throw err; } catch(...) { std::cout << "Error while reading in image for patient " << fileName << std::endl; throw; } } typename TImage::Pointer image = reader->GetOutput(); if(zeroOrigin) { double origin[TImage::ImageDimension]; for(unsigned int i = 0; i < TImage::ImageDimension; i++) { origin[i]=0; } image->SetOrigin(origin); } return image; } template static void WriteImage(typename ImageType::Pointer &image , const std::string &filename) { typedef itk::ImageFileWriter< ImageType > WriterType; typename WriterType::Pointer writer = WriterType::New(); typename ImageIOType::Pointer imageio(ImageIOType::New()); writer->SetImageIO(imageio); writer->SetFileName(filename.c_str()); writer->SetInput(image); try { writer->Update(); } catch (itk::ExceptionObject &err) { std::cerr << "Exception Object caught: " << std::endl << err << std::endl; throw; } } // // generate random pixels of various types static void RandomPix(vnl_random &randgen,itk::RGBPixel &pix) { for(unsigned int i = 0; i < 3; i++) { pix[i] = randgen.lrand32(itk::NumericTraits::max()); } } template static void RandomPix(vnl_random &randgen, TPixel &pix) { pix = randgen.lrand32(itk::NumericTraits::max()); } static void RandomPix(vnl_random &randgen, long long &pix) { pix = randgen.lrand32(itk::NumericTraits::max()); pix = (pix << 32) | randgen.lrand32(); } static void RandomPix(vnl_random &randgen, unsigned long long &pix) { pix = randgen.lrand32(); pix = (pix << 32) | randgen.lrand32(); } static void RandomPix(vnl_random &randgen, double &pix) { pix = randgen.drand64(itk::NumericTraits::max()); } static void RandomPix(vnl_random &randgen, float &pix) { pix = randgen.drand64(itk::NumericTraits::max()); } static int Remove(const char *fname) { return itksys::SystemTools::RemoveFile(fname); } template static void SetIdentityDirection(typename ImageType::Pointer &im) { typename ImageType::DirectionType dir; dir.SetIdentity(); im->SetDirection(dir); } template static typename ImageType::Pointer AllocateImageFromRegionAndSpacing(const typename ImageType::RegionType ®ion, const typename ImageType::SpacingType &spacing) { typename ImageType::Pointer rval = ImageType::New(); SetIdentityDirection(rval); rval->SetSpacing(spacing); rval->SetRegions(region); rval->Allocate(); return rval; } template static typename ImageType::Pointer AllocateImageFromRegionAndSpacing(const typename ImageType::RegionType ®ion, const typename ImageType::SpacingType &spacing, int vecLength) { typename ImageType::Pointer rval = ImageType::New(); rval->SetSpacing(spacing); rval->SetRegions(region); rval->SetVectorLength(vecLength); rval->Allocate(); return rval; } }; } #endif // itkIOTestHelper_h