/*
 * Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
 *
 * This file is part of Orfeo Toolbox
 *
 *     https://www.orfeo-toolbox.org/
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

#ifndef otbTransform_h
#define otbTransform_h

#include "itkTransform.h"
#include "vnl/vnl_vector_fixed.h"


namespace otb
{
/** \class Transform
 * \brief Class to overload method passed to virtual pure in ITK V4.
 *
 *
 *
 * \ingroup OTBTransform
 */
template <class TScalarType, unsigned int NInputDimensions = 3,
          unsigned int NOutputDimensions = 3>
class ITK_EXPORT       Transform : public itk::Transform<TScalarType, // Data type for scalars
                                                   NInputDimensions,  // Number of dimensions in the input space
                                                   NOutputDimensions> // Number of dimensions in the output space
{
public:
  /** Standard class typedefs. */
  typedef Transform Self;
  typedef itk::Transform<TScalarType, NInputDimensions, NOutputDimensions> Superclass;
  typedef itk::SmartPointer<Self>       Pointer;
  typedef itk::SmartPointer<const Self> ConstPointer;

  /** Run-time type information (and related methods). */
  itkTypeMacro(Transform, itk::Transform);

  /** Dimension of the domain space. */
  itkStaticConstMacro(InputSpaceDimension, unsigned int, NInputDimensions);
  itkStaticConstMacro(OutputSpaceDimension, unsigned int, NOutputDimensions);

  /** Get the size of the input space */
  unsigned int GetInputSpaceDimension(void) const override
  {
    return NInputDimensions;
  }

  /** Get the size of the output space */
  unsigned int GetOutputSpaceDimension(void) const override
  {
    return NOutputDimensions;
  }

  /** Type of the scalar representing coordinate and vector elements. */
  typedef TScalarType ScalarType;

  /** Type of the input parameters. */
  typedef typename Superclass::ParametersType         ParametersType;
  typedef typename Superclass::ParametersValueType    ParametersValueType;
  typedef typename Superclass::NumberOfParametersType NumberOfParametersType;

  /** Type of the Jacobian matrix. */
  typedef itk::Array2D<double> JacobianType;

  /** Standard vector type for this class. */
  typedef itk::Vector<TScalarType, NInputDimensions>  InputVectorType;
  typedef itk::Vector<TScalarType, NOutputDimensions> OutputVectorType;

  /** Standard covariant vector type for this class */
  typedef itk::CovariantVector<TScalarType, NInputDimensions>  InputCovariantVectorType;
  typedef itk::CovariantVector<TScalarType, NOutputDimensions> OutputCovariantVectorType;

  /** Standard vnl_vector type for this class. */
  typedef vnl_vector_fixed<TScalarType, NInputDimensions>  InputVnlVectorType;
  typedef vnl_vector_fixed<TScalarType, NOutputDimensions> OutputVnlVectorType;

  /** Standard coordinate point type for this class */
  typedef itk::Point<TScalarType, NInputDimensions>  InputPointType;
  typedef itk::Point<TScalarType, NOutputDimensions> OutputPointType;

  /** Base inverse transform type. This type should not be changed to the
   * concrete inverse transform type or inheritance would be lost. */
  typedef typename Superclass::InverseTransformBaseType InverseTransformBaseType;

  typedef typename Superclass::InverseTransformBasePointer InverseTransformBasePointer;

  /**  Method to transform a point. */

  OutputPointType TransformPoint(const InputPointType&) const override
  {
    return OutputPointType();
  }

  using Superclass::TransformVector;
  /**  Method to transform a vector. */
  OutputVectorType TransformVector(const InputVectorType&) const override
  {
    return OutputVectorType();
  }

  /**  Method to transform a vnl_vector. */
  OutputVnlVectorType TransformVector(const InputVnlVectorType&) const override
  {
    return OutputVnlVectorType();
  }

  using Superclass::TransformCovariantVector;
  /**  Method to transform a CovariantVector. */
  OutputCovariantVectorType TransformCovariantVector(const InputCovariantVectorType&) const override
  {
    return OutputCovariantVectorType();
  }


  /** Set the transformation parameters and update internal transformation.
   * SetParameters gives the transform the option to set it's
   * parameters by keeping a reference to the parameters, or by
   * copying.  To force the transform to copy it's parameters call
   * SetParametersByValue.
   * \sa SetParametersByValue
   */
  void SetParameters(const ParametersType&) override
  {
    itkExceptionMacro(<< "Subclasses should override this method (SetParameters)")
  }

  void ComputeJacobianWithRespectToParameters(const InputPointType&, JacobianType&) const override
  {
    itkExceptionMacro(<< "Subclasses should override this method (ComputeJacobianWithRespectToParameters)");
  }

  /** Set the transformation parameters and update internal transformation.
   * This method forces the transform to copy the parameters.  The
   * default implementation is to call SetParameters.  This call must
   * be overridden if the transform normally implements SetParameters
   * by keeping a reference to the parameters.
   * \sa SetParameters
   */
  void SetParametersByValue(const ParametersType& p) override
  {
    this->SetParameters(p);
  }

  /** Get the Transformation Parameters. */
  const ParametersType& GetParameters(void) const override
  {
    return m_Parameters;
  }

  /** Set the fixed parameters and update internal transformation. */
  void SetFixedParameters(const ParametersType&) override
  {
    itkExceptionMacro(<< "Subclasses should override this method (SetFixedParameters)")
  }

  /** Get the Fixed Parameters. */
  const ParametersType& GetFixedParameters(void) const override
  {
    itkExceptionMacro(<< "Subclasses should override this method (GetFixedParameters)");
    // Next line is needed to avoid errors due to:
    // "function must return a value".
    return this->m_FixedParameters;
  }

/** Compute the Jacobian of the transformation
 *
 * This method computes the Jacobian matrix of the transformation
 * at a given input point. The rank of the Jacobian will also indicate
 * if the transform is invertible at this point.
 *
 * The Jacobian is be expressed as a matrix of partial derivatives of the
 * output point components with respect to the parameters that defined
 * the transform:
 *
 * \f[
 *
J=\left[ \begin{array}{cccc}
\frac{\partial x_{1}}{\partial p_{1}} &
\frac{\partial x_{1}}{\partial p_{2}} &
\cdots  & \frac{\partial x_{1}}{\partial p_{m}}\\
\frac{\partial x_{2}}{\partial p_{1}} &
\frac{\partial x_{2}}{\partial p_{2}} &
\cdots  & \frac{\partial x_{2}}{\partial p_{m}}\\
\vdots  & \vdots  & \ddots  & \vdots \\
\frac{\partial x_{n}}{\partial p_{1}} &
\frac{\partial x_{n}}{\partial p_{2}} &
\cdots  & \frac{\partial x_{n}}{\partial p_{m}}
\end{array}\right]
 *
 * \f]
 * */
#ifdef ITKV3_COMPATIBILITY
  const JacobianType& GetJacobian(const InputPointType&) const override
#else
  virtual const JacobianType& GetJacobian(const InputPointType&) const
#endif
  {
    itkExceptionMacro(<< "Subclass should override this method (GetJacobian)");
    // Next line is needed to avoid errors due to:
    // "function must return a value" .
    return this->m_Jacobian;
  }

  /** Return the number of parameters that completely define the Transfom  */
  NumberOfParametersType GetNumberOfParameters(void) const override
  {
    return this->m_Parameters.Size();
  }

protected:
  Transform() : Superclass::Transform()
  {
  }

  Transform(NumberOfParametersType numberOfParameters) : Superclass::Transform(numberOfParameters)
  {
  }

  ~Transform() override
  {
  }

  void PrintSelf(std::ostream& os, itk::Indent indent) const override
  {
    Superclass::PrintSelf(os, indent);
#if 0
    os << indent << "Parameters : " << m_Parameters << std::endl;
    os << indent << "FixedParameters : " << m_FixedParameters << std::endl;
    os << indent << "Jacobian : " << m_Jacobian << std::endl;
#endif
  }


  mutable ParametersType m_Parameters;
  mutable ParametersType m_FixedParameters;

  mutable JacobianType m_Jacobian;

private:
  Transform(const Self&) = delete;
  void operator=(const Self&) = delete;
};
} // end namespace otb

#endif